The Environmental Genome Project

Table 3.

Examples of SNP Data from the GeneSNPs Database

HUGO ID^a	SIZE (bp)	% scanned	SNPs^b	cSNPs^c	nsCSNPs^d	SNPs (>5%)^e	SNPs (<5%)^f
^a Genes listed were arbitrarily selected from the database.
^b Number of SNPs in the scanned regions.
^c Number of coding-region SNPs.
^d Number of nonsynonymous coding-region SNPs.
^e Number of SNPs that occur in greater than 5% of the population.
^f Number of SNPs that occur in less than 5% of the population.
ALDH1A	55463	77.3	203	1	1	71	132
ATM	115614	71.1	393	10	4	83	310
BAX	8926	67.5	44	1	0	14	30
BRCA1	82901	83.8	301	21	10	129	172
CCND1	16032	70.7	89	1	0	15	74
CDK2	7644	97.8	31	3	1	6	25
CDKN1A	10909	100.0	48	0	0	24	24
CHEK1	30279	74.9	88	1	1	33	55
CYP1A2	7757	66.6	12	0	0	7	5
GADD45B	4538	91.7	28	0	0	8	20
GSTP1	5637	96.2	37	5	2	20	17
HTATIP	8046	85.6	40	2	0	16	24
IGF1	88068	34.5	133	30	0	29	104
IL1B	7047	100.0	20	2	0	11	9
MSH6	26759	83.8	164	13	5	41	123
MTHFR	15837	96.3	116	12	7	43	73
MYC	8619	96.3	44	6	4	9	35
OGG1	10463	91.3	33	4	4	8	25
PCNA	7637	98.9	44	1	0	22	22
POLA	309919	47.4	270	5	1	47	223
PRKR	45281	49.6	126	6	0	22	104
RAD51	39523	68.1	143	0	0	39	104
TNF	7242	100.0	44	2	1	8	36
UNG	14717	98.0	85	1	0	15	70
XPA	24996	96.8	140	2	2	72	68
AVERAGE	38394.2	81.8	107.0	5.2	1.7	31.7	75.4
MEDIAN	14717	85.6	85	2	1	22	55
ST DEV	63783.9	18.5	97.0	7.2	2.6	29.7	73.3