|
Type Status
| |||||||||||
Taxonomy
|
The taxonomic placement of this family within the root Universal Root.
The taxonomy from the rank of class and below is based upon currently published taxonomic opinion. For a complete taxonomy, refer to The Taxonomic Outline of Bacteria and Archaea, Release 7.7.
|
||||||||||
Citation
|
When referring to this Abstract, please use its Digital Object Identifier.
Taxon Abstract for the family Lachnospiraceae Rainey 2010. Retrieved . https://doi.org/10.1601/tx.4118.
|
||||||||||
Source File
|
This information was last reviewed on June 1, 2022. |
References
- Podosokorskaya OA, Bonch-Osmolovskaya EA, Beskorovaynyy AV, Toshchakov SV, Kolganova TV, Kublanov IV. Mobilitalea sibirica gen. nov., sp. nov., a halotolerant polysaccharide-degrading bacterium. Int J Syst Evol Microbiol 2014; 64:2657-2661. https://doi.org/10.1099/ijs.0.057109-0 [PubMed].
- Rainey FA. Order I. Clostridiales Prevot 1953. In: De Vos P, Garrity G, Jones D, Krieg NR, Ludwig W, Rainey FA, Schleifer KH, Whitman WB (eds), Bergey's Manual of Systematic Bacteriology, Second Edition, Volume 3, Springer-Verlag, New York, 2009, p. 736-1191.
- Lagkouvardos I, Pukall R, Abt B, Foesel BU, Meier-Kolthoff JP, Kumar N, Bresciani A, Martínez I, Just S, Ziegler C, Brugiroux S, Garzetti D, Wenning M, Bui TP, Wang J, Hugenholtz F, Plugge CM, Peterson DA, Hornef MW, Baines JF, Smidt H, Walter J, Kristiansen K, Nielsen HB, Haller D, Overmann J, Stecher B, Clavel T. The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota. Nat Microbiol 2016; 1:16131. https://doi.org/10.1038/nmicrobiol.2016.131 [PubMed].
- Hedberg ME, Moore ERB, Svensson-Stadler L, Hörstedt P, Baranov V, Hernell O, Wai SN, Hammarström S, Hammarström M-L. Lachnoanaerobaculum gen. nov., a new genus in the Lachnospiraceae: characterization of Lachnoanaerobaculum umeaense gen. nov., sp. nov., isolated from the human small intestine, and Lachnoanaerobaculum orale sp. nov., isolated from saliva, and reclassification of Eubacterium saburreum (Pre ́ vot 1966) Holdeman and Moore 1970 as Lachnoanaerobaculum saburreum comb. nov. Int J Syst Evol Microbiol 2012; 62:2685-2690. https://doi.org/10.1099/ijs.0.033613-0 [PubMed].
- Haas KN, Blanchard JL. Kineothrix alysoides, gen. nov., sp. nov., a saccharolytic, butyrate-producer within the family Lachnospiraceae. Int J Syst Evol Microbiol 2017; 67:402-410. https://doi.org/10.1099/ijsem.0.001643 [PubMed].
- Takada T, Kurakawa T, Tsuji H, Nomoto K. Fusicatenibacter saccharivorans gen. nov., sp. nov., isolated from human faeces. Int J Syst Evol Microbiol 2013; 63:3691-3696. https://doi.org/10.1099/ijs.0.045823-0 [PubMed].
- Ngugi DK, Miyake S, Cahill M, Vinu M, Hackmann TJ, Blom J, Tietbohl MD, Berumen ML, Stingl U. Genomic diversification of giant enteric symbionts reflects host dietary lifestyles. Proc Natl Acad Sci U S A 2017; 114:E7592-E7601. https://doi.org/10.1073/pnas.1703070114 [PubMed].
- Rasmussen TS, Streidl T, Hitch TCA, Wortmann E, Deptula P, Kofoed MVW, Riedel T, Neumann-Schaal M, Hansen M, Nielsen DS, Clavel T, Vogensen FK. Sporofaciens musculi gen. nov., sp. nov., a novel bacterium isolated from the caecum of an obese mouse. Int J Syst Evol Microbiol 2021; 71:. https://doi.org/10.1099/ijsem.0.004673 [PubMed].
- Shetty SA, Zuffa S, Bui TPN, Aalvink S, Smidt H, De Vos WM. Reclassification of Eubacterium hallii as Anaerobutyricum hallii gen. nov., comb. nov., and description of Anaerobutyricum soehngenii sp. nov., a butyrate and propionate-producing bacterium from infant faeces. Int J Syst Evol Microbiol 2018; 68:3741-3746. https://doi.org/10.1099/ijsem.0.003041 [PubMed].
- Abdugheni R, Wang Y-J, Li D-H, Du M-X, Liu C, Zhou N, Liu S-J. Pararoseburia lenta gen. nov., sp. nov. isolated from human faeces. Int J Syst Evol Microbiol 2022; 72:. https://doi.org/10.1099/ijsem.0.005371 [PubMed].
- Ueki A, Ohtaki Y, Kaku N, Ueki K. Descriptions of Anaerotaenia torta gen. nov., sp. nov. and Anaerocolumna cellulosilytica gen. nov., sp. nov. isolated from a methanogenic reactor of cattle waste and reclassification of Clostridium aminovalericum, Clostridium jejuense and Clostridium xylanovorans as Anaerocolumna species. Int J Syst Evol Microbiol 2016; 66:2936-2943. https://doi.org/10.1099/ijsem.0.001123 [PubMed].
- Seo B, Yoo JE, Lee YM, Ko G. Sellimonas intestinalis gen. nov., sp. nov., isolated from human faeces. Int J Syst Evol Microbiol 2016; 66:951-956. https://doi.org/10.1099/ijsem.0.000817 [PubMed].
- Durand GA, Pham T, Ndongo S, Traore SI, Dubourg G, Lagier J-C, Michelle C, Armstrong N, Fournier P-E, Raoult D, Million M. Blautia massiliensis sp. nov., isolated from a fresh human fecal sample and emended description of the genus Blautia. Anaerobe 2017; 43:47-55. https://doi.org/10.1016/j.anaerobe.2016.12.001 [PubMed].
- Kläring K, Just S, Lagkouvardos I, Hanske L, Haller D, Blaut M, Wenning M, Clavel T. Murimonas intestini gen. nov., sp. nov., an acetate producing bacterium of the family Lachnospiraceae isolated from the mouse gut. Int J Syst Evol Microbiol 2015; 65:870-878. https://doi.org/10.1099/ijs.0.000030 [PubMed].
- Patil Y, Junghare M, Pester M, Müller N, Schink B. Anaerobium acetethylicum gen. nov., sp. nov., a strictly anaerobic, gluconate-fermenting bacterium isolated from a methanogenic bioreactor. Int J Syst Evol Microbiol 2015; 65:3289-3296. https://doi.org/10.1099/ijsem.0.000410 [PubMed].
- Pfeiffer N, Desmarchelier C, Blaut M, Daniel H, Haller D, Clavel T. Acetatifactor muris gen. nov., sp. nov., a novel bacterium isolated from the intestine of an obese mouse. Arch Microbiol 2012; 194:901-907. https://doi.org/10.1007/s00203-012-0822-1 [PubMed].
- Watanabe M, Kaku N, Ueki K, Ueki A. Falcatimonas natans gen. nov., sp. nov., a strictly-anaerobic, amino-acid-decomposing bacterium isolated from a methanogenic reactor of cattle waste. Int J Syst Evol Microbiol 2016; 66:4639-4644. https://doi.org/10.1099/ijsem.0.001403 [PubMed].
- Sorokin DY, Tourova TP, Panteleeva AN, Kaparullina EN, Muyzer G. Anaerobic utilization of pectinous substrates at extremely haloalkaline conditions by Natranaerovirga pectinivora gen. nov., sp. nov., and Natranaerovirga hydrolytica sp. nov., isolated from hypersaline soda lakes. Extremophiles 2012; 16:307-315. https://doi.org/10.1007/s00792-012-0431-6 [PubMed].
- Carlier JP, K'ouas G, Han XY. Moryella indoligenes gen. nov., sp. nov., an anaerobic bacterium isolated from clinical specimens. Int J Syst Evol Microbiol 2007; 57:725-729. https://doi.org/10.1099/ijs.0.64705-0 [PubMed].
- Hitch TCA, Riedel T, Oren A, Overmann J, Lawley TD, Clavel T. Automated analysis of genomic sequences facilitates high-throughput and comprehensive description of bacteria. ISME Commun 2021; 1:16. https://doi.org/10.1038/s43705-021-00017-z.
- Rettenmaier R, Thieme N, Streubel J, Di Bello L, Kowollik M-L, Huang L, Maus I, Klingl A, Liebl W, Zverlov VV. Variimorphobacter saccharofermentans gen. nov., sp. nov., a new member of the family Lachnospiraceae, isolated from a maize-fed biogas fermenter. Int J Syst Evol Microbiol 2021; 71:. https://doi.org/10.1099/ijsem.0.005044 [PubMed].
- Valk LC, Frank J, de la Torre-Cortés P, van 't Hof M, van Maris AJA, Pronk JT, van Loosdrecht MCM. Galacturonate Metabolism in Anaerobic Chemostat Enrichment Cultures: Combined Fermentation and Acetogenesis by the Dominant sp. nov. "Candidatus Galacturonibacter soehngenii". Appl Environ Microbiol 2018; 84:. https://doi.org/10.1128/AEM.01370-18 [PubMed].
- Holm JB, France MT, Ma B, McComb E, Robinson CK, Mehta A, Tallon LJ, Brotman RM, Ravel J. Comparative Metagenome-Assembled Genome Analysis of "Candidatus Lachnocurva vaginae", Formerly Known as Bacterial Vaginosis-Associated Bacterium-1 (BVAB1). Front Cell Infect Microbiol 2020; 10:117-117. https://doi.org/10.3389/fcimb.2020.00117 [PubMed].
- Zou Y, Xue W, Lin X, Lv M, Luo G, Dai Y, Sun H, Liu S-W, Sun C-H, Hu T, Xiao L. Butyribacter intestini gen. nov., sp. nov., a butyric acid-producing bacterium of the family Lachnospiraceae isolated from human faeces, and reclassification of Acetivibrio ethanolgignens as Acetanaerobacter ethanolgignens gen. nov., comb. nov. Syst Appl Microbiol 2021; 44:126201-126201. https://doi.org/10.1016/j.syapm.2021.126201 [PubMed].
- Liu C, Du M-X, Abuduaini R, Yu H-Y, Li D-H, Wang Y-J, Zhou N, Jiang M-Z, Niu P-X, Han S-S, Chen H-H, Shi W-Y, Wu L, Xin Y-H, Ma J, Zhou Y, Jiang C-Y, Liu H-W, Liu S-J. Enlightening the taxonomy darkness of human gut microbiomes with a cultured biobank. Microbiome 2021; 9:119-119. https://doi.org/10.1186/s40168-021-01064-3 [PubMed].
- Braune A, Blaut M. Catenibacillus scindens gen. nov., sp. nov., a C-deglycosylating human intestinal representative of the Lachnospiraceae. Int J Syst Evol Microbiol 2018; 68:3356-3361. https://doi.org/10.1099/ijsem.0.003001 [PubMed].
- Chaplin AV, Shcherbakova VA, Pikina AP, Sokolova SR, Korzhanova M, Belova VA, Korostin DO, Rebrikov DV, Kardonsky DA, Urban AS, Zakharzhevskaya NB, Suzina NE, Podoprigora IV, Das MS, Kholopova DO, Efimov BA. Diplocloster agilis gen. nov., sp. nov. and Diplocloster modestus sp. nov., two novel anaerobic fermentative members of Lachnospiraceae isolated from human faeces. Int J Syst Evol Microbiol 2022; 72:. https://doi.org/10.1099/ijsem.0.005222 [PubMed].
- Chai L-J, Fang G-Y, Xu P-X, Zhang X-J, Lu Z-M, Zhang S-Y, Wang S-T, Shen C-H, Shi J-S, Xu Z-H. Novisyntrophococcus fermenticellae gen. nov., sp. nov., isolated from an anaerobic fermentation cellar of Chinese strong-flavour baijiu. Int J Syst Evol Microbiol 2021; 71:. https://doi.org/10.1099/ijsem.0.004991 [PubMed].
- Carlier JP, K'ouas G, Bonne I, Lozniewski A, Mory F. Oribacterium sinus gen. nov., sp. nov., within the family 'Lachnospiraceae' (phylum Firmicutes). Int J Syst Evol Microbiol 2004; 54:1611-1615. https://doi.org/10.1099/ijs.0.63060-0 [PubMed].
- Ueki A, Goto K, Ohtaki Y, Kaku N, Ueki K. Description of Anaerotignum aminivorans gen. nov., sp. nov., a strictly anaerobic, amino-acid-decomposing bacterium isolated from a methanogenic reactor, and reclassification of Clostridium propionicum, Clostridium neopropionicum and Clostridium lactatifermentans as species of the genus Anaerotignum. Int J Syst Evol Microbiol 2017; 67:4146-4153. https://doi.org/10.1099/ijsem.0.002268 [PubMed].
- Onrust L, Petzoldt D, Eeckhaut V, De Maesschalck C, Haesebrouck F, Rautenschlein S, Ducatelle R, Van Immerseel F, Taras D. Caecibacterium sporoformans gen. nov., sp. nov., an anaerobic, butyrate-producing, spore-forming bacterium isolated from chicken caecum. Int J Syst Evol Microbiol 2017; 67:4589-4594. https://doi.org/10.1099/ijsem.0.002338 [PubMed].
- Cotta MA, Whitehead TR, Falsen E, Moore E, Lawson PA. Robinsoniella peoriensis gen. nov., sp. nov., isolated from a swine-manure storage pit and a human clinical source. Int J Syst Evol Microbiol 2009; 59:150-155. https://doi.org/10.1099/ijs.0.65676-0 [PubMed].
- Cai S, Dong X. Cellulosilyticum ruminicola gen. nov., sp. nov., isolated from the rumen of yak, and reclassification of Clostridium lentocellum as Cellulosilyticum lentocellum comb. nov. Int J Syst Evol Microbiol 2010; 60:845-849. https://doi.org/10.1099/ijs.0.014712-0 [PubMed].
- Schouw A, Eide TL, Stokke R, Pedersen RB, Steen IH, Bødtker G. Abyssivirga alkaniphila gen. nov., sp. nov., an alkane-degrading, anaerobic bacterium from a deep-sea hydrothermal vent system, and emended descriptions of Natranaerovirga pectinivora and Natranaerovirga hydrolytica. Int J Syst Evol Microbiol 2016; 66:1724-1734. https://doi.org/10.1099/ijsem.0.000934 [PubMed].
- Amir I, Bouvet P, Legeay C, Gophna U, Weinberger A. Eisenbergiella tayi gen. nov., sp. nov., isolated from human blood. Int J Syst Evol Microbiol 2014; 64:907-914. https://doi.org/10.1099/ijs.0.057331-0 [PubMed].
- Scarborough MJ, Myers KS, Donohue TJ, Noguera DR. Medium-Chain Fatty Acid Synthesis by "Candidatus Weimeria bifida" gen. nov., sp. nov., and "Candidatus Pseudoramibacter fermentans" sp. nov. Appl Environ Microbiol 2020; 86:. https://doi.org/10.1128/AEM.02242-19 [PubMed].
- Sakamoto M, Iino T, Ohkuma M. Faecalimonas umbilicata gen. nov., sp. nov., isolated from human faeces, and reclassification of Eubacterium contortum, Eubacterium fissicatena and Clostridium oroticum as Faecalicatena contorta gen. nov., comb. nov., Faecalicatena fissicatena comb. nov. and Faecalicatena orotica comb.nov. Int J Syst Evol Microbiol 2017; 67:1219-1227. https://doi.org/10.1099/ijsem.0.001790 [PubMed].
- Eeckhaut V, van Immerseel F, Pasmans F, De Brandt E, Haesebrouck F, Ducatelle R, Vandamme P. Anaerostipes butyraticus sp. nov., an anaerobic, butyrate-producing bacterium from Clostridium cluster XIVa isolated from broiler chicken caecal content, and emended description of the genus Anaerostipes. Int J Syst Evol Microbiol 2010; 60:1108-1112. https://doi.org/10.1099/ijs.0.015289-0 [PubMed].
- Jarzembowska M, Sousa DZ, Beyer F, Zwijnenburg A, Plugge CM, Stams AJ. Lachnotalea glycerini gen. nov., sp. nov., an anaerobe isolated from a nanofiltration unit treating anoxic groundwater. Int J Syst Evol Microbiol 2016; 66:774-779. https://doi.org/10.1099/ijsem.0.000791 [PubMed].
- Togo AH, Diop A, Bittar F, Maraninchi M, Valero R, Armstrong N, Dubourg G, Labas N, Richez M, Delerce J, Levasseur A, Fournier P-E, Raoult D, Million M. Description of Mediterraneibacter massiliensis, gen. nov., sp. nov., a new genus isolated from the gut microbiota of an obese patient and reclassification of Ruminococcus faecis, Ruminococcus lactaris, Ruminococcus torques, Ruminococcus gnavus and Clostridium glycyrrhizinilyticum as Mediterraneibacter faecis comb. nov., Mediterraneibacter lactaris comb. nov., Mediterraneibacter torques comb. nov., Mediterraneibacter gnavus comb. nov. and Mediterraneibacter glycyrrhizinilyticus comb. nov. Antonie van Leeuwenhoek 2018; 111:2107-2128. https://doi.org/10.1007/s10482-018-1104-y [PubMed].
- Haas KN, Blanchard JL. Reclassification of the Clostridium clostridioforme and Clostridium sphenoides clades as Enterocloster gen. nov. and Lacrimispora gen. nov., including reclassification of 15 taxa. Int J Syst Evol Microbiol 2020; 70:23-34. https://doi.org/10.1099/ijsem.0.003698 [PubMed].
- Soh M, Miyake S, Lim A, Ding Y, Seedorf H. Schaedlerella arabinosiphila gen. nov., sp. nov., a D-arabinose-utilizing bacterium isolated from faeces of C57BL/6J mice that is a close relative of Clostridium species ASF 502. Int J Syst Evol Microbiol 2019; 69:3616-3622. https://doi.org/10.1099/ijsem.0.003671 [PubMed].
- Kim W, Yang S-H, Park M-J, Oh J, Lee J-H, Kwon KK. Anaerosacchariphilus polymeriproducens gen. nov., sp. nov., an anaerobic bacterium isolated from a salt field. Int J Syst Evol Microbiol 2019; 69:1934-1940. https://doi.org/10.1099/ijsem.0.003404 [PubMed].
- Sizova MV, Muller P, Panikov N, Mandalakis M, Hohmann T, Hazen A, Fowle W, Prozorov T, Bazylinski DA, Epstein SS. Stomatobaculum longum gen. nov., sp. nov., an obligately anaerobic bacterium from the human oral cavity. Int J Syst Evol Microbiol 2013; 63:1450-1456. https://doi.org/10.1099/ijs.0.042812-0 [PubMed].
- Koeck DE, Ludwig W, Wanner G, Zverlov VV, Liebl W, Schwarz WH. Herbinix hemicellulosilytica gen. nov., sp. nov., a thermophilic cellulose-degrading bacterium isolated from a thermophilic biogas reactor. Int J Syst Evol Microbiol 2015; 65:2365-2371. https://doi.org/10.1099/ijs.0.000264 [PubMed].
- Seo B, Yoo JE, Lee YM, Ko G. Merdimonas faecis gen. nov., sp. nov., isolated from human faeces. Int J Syst Evol Microbiol 2017; 67:2430-2435. https://doi.org/10.1099/ijsem.0.001977 [PubMed].
- Mbengue M, Thioye A, Labat M, Casalot L, Joseph M, Samb A, Ben Ali Gam Z. Mobilisporobacter senegalensis gen. nov., sp. nov., an anaerobic bacterium isolated from tropical shea cake. Int J Syst Evol Microbiol 2016; 66:1383-1388. https://doi.org/10.1099/ijsem.0.000889 [PubMed].
- Thompson CL, Vier R, Mikaelyan A, Wienemann T, Brune A. 'Candidatus Arthromitus' revised: segmented filamentous bacteria in arthropod guts are members of Lachnospiraceae. Environ Microbiol 2012; 14:1454-1465. https://doi.org/10.1111/j.1462-2920.2012.02731.x [PubMed].
- Rosero JA, Killer J, Sechovcová H, Mrázek J, Benada O, Fliegerová K, Havlík J, Kopečný J. Reclassification of Eubacterium rectale (Hauduroy et al. 1937) Prévot 1938 in a new genus Agathobacter gen. nov. as Agathobacter rectalis comb. nov., and description of Agathobacter ruminis sp. nov., isolated from the rumen contents of sheep and cows. Int J Syst Evol Microbiol 2016; 66:768-773. https://doi.org/10.1099/ijsem.0.000788 [PubMed].
- Yutin N, Galperin MY. A genomic update on clostridial phylogeny: Gram-negative spore formers and other misplaced clostridia. Environ Microbiol 2013; 15:2631-2641. https://doi.org/10.1111/1462-2920.12173 [PubMed].
- Wylensek D, Hitch TCA, Riedel T, Afrizal A, Kumar N, Wortmann E, Liu T, Devendran S, Lesker TR, Hernández SB, Heine V, Buhl EM, M D'Agostino P, Cumbo F, Fischöder T, Wyschkon M, Looft T, Parreira VR, Abt B, Doden HL, Ly L, Alves JMP, Reichlin M, Flisikowski K, Suarez LN, Neumann AP, Suen G, de Wouters T, Rohn S, Lagkouvardos I, Allen-Vercoe E, Spröer C, Bunk B, Taverne-Thiele AJ, Giesbers M, Wells JM, Neuhaus K, Schnieke A, Cava F, Segata N, Elling L, Strowig T, Ridlon JM, Gulder TAM, Overmann J, Clavel T. A collection of bacterial isolates from the pig intestine reveals functional and taxonomic diversity. Nat Commun 2020; 11:6389-6389. https://doi.org/10.1038/s41467-020-19929-w [PubMed].
- Gerritsen J, Fuentes S, Grievink W, van Niftrik L, Tindall BJ, Timmerman HM, Rijkers GT, Smidt H. Characterization of Romboutsia ilealis gen. nov., sp. nov., isolated from the gastro-intestinal tract of a rat, and proposal for the reclassification of five closely related members of the genus Clostridium into the genera Romboutsia gen. nov., Intestinibacter gen. nov., Terrisporobacter gen. nov. and Asaccharospora gen. nov. Int J Syst Evol Microbiol 2014; 64:1600-1616. https://doi.org/10.1099/ijs.0.059543-0 [PubMed].