Taxon DOI
10.1601/tx.8013
Name
 Rautio et al. 2003 emend. Sakamoto et al. 2020
Taxonomic Rank
genus
Methodology
Nomenclatural Taxonomy [1980-2022]
Incertae sedis taxa are placed using SOSCC (Garrity and Lilburn 2008)
Parent
Taxon RecordName Record
Krieg et al. 2012 emend. García-López et al. 2019
Members
(Weinberg et al. 1937) Rautio et al. 2003 emend. Hahnke et al. 2016
Sakamoto et al. 2020
Sakamoto et al. 2020
Rautio et al. 2003
Liu et al. 2022
Pfleiderer et al. 2017
Nagai et al. 2010
Shkoporov et al. 2015
Pfleiderer et al. 2013
Hugon et al. 2013
Forster et al. 2022
Song et al. 2006
Mishra et al. 2012
Song et al. 2006 emend. Hahnke et al. 2016
Lagier et al. 2014
None 2015
Type Status
Taxonomy
The taxonomic placement of this genus within the root Universal Root.
  Woese et al. 1990
  (None 2015) Woese et al. 1990
  corrig. Krieg et al. 2021
  corrig. Krieg 2012 emend. García-López et al. 2019
  Krieg 2012 emend. García-López et al. 2019
  Krieg et al. 2012 emend. García-López et al. 2019
  Rautio et al. 2003 emend. Sakamoto et al. 2020

The taxonomy from the rank of class and below is based upon currently published taxonomic opinion. For a complete taxonomy, refer to The Taxonomic Outline of Bacteria and Archaea, Release 7.7.
Citation
When referring to this Abstract, please use its Digital Object Identifier.
Taxon Abstract for the genus Alistipes Rautio et al. 2003 emend. Sakamoto et al. 2020. Retrieved . https://doi.org/10.1601/tx.8013.
Source File
This information was last reviewed on April 22, 2022.

References

  1. Song Y, Könönen E, Rautio M, Liu C, Bryk A, Eerola E, Finegold SM. Alistipes onderdonkii sp. nov. and Alistipes shahii sp. nov., of human origin. Int J Syst Evol Microbiol 2006; 56:1985-1990. https://doi.org/10.1099/ijs.0.64318-0 [PubMed].
  2. Pfleiderer A, Mishra AK, Lagier J-C, Robert C, Caputo A, Raoult D, Fournier P-E. Non-contiguous finished genome sequence and description of Alistipes ihumii sp. nov. Stand Genomic Sci 2014; 9:1211-1235. https://doi.org/10.4056/sigs.4698398 [PubMed].
  3. Pfleiderer A, Lagier J-C, Armougom F, Robert C, Vialettes B, Raoult D. Culturomics identified 11 new bacterial species from a single anorexia nervosa stool sample. Eur J Clin Microbiol Infect Dis 2013; 32:1471-1481. https://doi.org/10.1007/s10096-013-1900-2 [PubMed].
  4. Liu C, Du M-X, Abuduaini R, Yu H-Y, Li D-H, Wang Y-J, Zhou N, Jiang M-Z, Niu P-X, Han S-S, Chen H-H, Shi W-Y, Wu L, Xin Y-H, Ma J, Zhou Y, Jiang C-Y, Liu H-W, Liu S-J. Enlightening the taxonomy darkness of human gut microbiomes with a cultured biobank. Microbiome 2021; 9:119-119. https://doi.org/10.1186/s40168-021-01064-3 [PubMed].
  5. Forster SC, Clare S, Beresford-Jones BS, Harcourt K, Notley G, Stares MD, Kumar N, Soderholm AT, Adoum A, Wong H, Morón B, Brandt C, Dougan G, Adams DJ, Maloy KJ, Pedicord VA, Lawley TD. Identification of gut microbial species linked with disease variability in a widely used mouse model of colitis. Nat Microbiol 2022; 7:590-599. https://doi.org/10.1038/s41564-022-01094-z [PubMed].
  6. Sakamoto M, Ikeyama N, Ogata Y, Suda W, Iino T, Hattori M, Ohkuma M. Alistipes communis sp. nov., Alistipes dispar sp. nov. and Alistipes onderdonkii subsp. vulgaris subsp. nov., isolated from human faeces, and creation of Alistipes onderdonkii subsp. onderdonkii subsp. nov. Int J Syst Evol Microbiol 2020; 70:473-480. https://doi.org/10.1099/ijsem.0.003778 [PubMed].
  7. Krieg NR, Staley JT, Brown DR, Hedlund BP, Paster BJ, Ward NL, Ludwig W, Whitman WB. Family III. Rikenellaceae fam. nov. In: Krieg NR, Staley JT, Brown DR, Hedlund BP, Paster BJ, Ward NL, Ludwig W, Whitman WB (eds), Bergey's Manual of Systematic Bacteriology, Second Edition, Volume 4, Springer, New York, 2010, p. 54.
  8. Nagai F, Morotomi M, Watanabe Y, Sakon H, Tanaka R. Alistipes indistinctus sp. nov. and Odoribacter laneus sp. nov., common members of the human intestinal microbiota isolated from faeces. Int J Syst Evol Microbiol 2010; 60:1296-1302. https://doi.org/10.1099/ijs.0.014571-0 [PubMed].
  9. Shkoporov AN, Chaplin AV, Khokhlova EV, Shcherbakova VA, Motuzova OV, Bozhenko VK, Kafarskaia LI, Efimov BA. Alistipes inops sp. nov. and Coprobacter secundus sp. nov., isolated from human faeces. Int J Syst Evol Microbiol 2015; 65:4580-4588. https://doi.org/10.1099/ijsem.0.000617 [PubMed].
  10. Rautio M, Eerola E, Väisänen-Tunkelrott ML, Molitoris D, Lawson P, Collins MD, Jousimies-Somer H. Reclassification of Bacteroides putredinis (Weinberg et al., 1937) in a new genus Alistipes gen. nov., as Alistipes putredinis comb. nov., and description of Alistipes finegoldii sp. nov., from human sources. Syst Appl Microbiol 2003; 26:182-188. https://doi.org/10.1078/072320203322346029 [PubMed].
  11. Hugon P, Ramasamy D, Lagier J-C, Rivet R, Couderc C, Raoult D, Fournier P-E. Non contiguous-finished genome sequence and description of Alistipes obesi sp. nov. Stand Genomic Sci 2013; 7:427-439. https://doi.org/10.4056/sigs.3336746 [PubMed].
  12. Lagier JC, Armougom F, Mishra AK, Nguyen T-T, Raoult D, Fournier P-E. Non-contiguous finished genome sequence and description of Alistipes timonensis sp. nov. Stand Genomic Sci 2012; 6:315-324. https://doi.org/10.4056/sigs.2685971 [PubMed].
  13. Mishra AK, Gimenez G, Lagier J-C, Robert C, Raoult D, Fournier P-E. Genome sequence and description of Alistipes senegalensis sp. nov. Stand Genomic Sci 2012; 6:304-314. https://doi.org/10.4056/sigs.2625821.
  14. No reference is available 2015